Package: taigatools 0.0.0.9000

Chloe Beaupre
taigatools: Tools for Boreal Caribou Demography
Spatial and demographic tools for caribou survival, recruitment, movement, and population growth rate estimation. Developed for Northwest Territories boreal caribou system as a part of CIMP247.
Authors:
taigatools_0.0.0.9000.tar.gz
taigatools_0.0.0.9000.zip(r-4.7)taigatools_0.0.0.9000.zip(r-4.6)taigatools_0.0.0.9000.zip(r-4.5)
taigatools_0.0.0.9000.tgz(r-4.6-any)taigatools_0.0.0.9000.tgz(r-4.5-any)
taigatools_0.0.0.9000.tar.gz(r-4.7-any)taigatools_0.0.0.9000.tar.gz(r-4.6-any)
taigatools_0.0.0.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
taigatools/json (API)
| # Install 'taigatools' in R: |
| install.packages('taigatools', repos = c('https://chlobeau.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/chlobeau/taigatools/issues
Last updated from:02bb6f434c. Checks:7 WARNING, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | WARNING | 127 | ||
| source / vignettes | OK | 117 | ||
| linux-release-x86_64 | WARNING | 93 | ||
| macos-release-arm64 | WARNING | 68 | ||
| macos-oldrel-arm64 | WARNING | 60 | ||
| windows-devel | WARNING | 78 | ||
| windows-release | WARNING | 61 | ||
| windows-oldrel | WARNING | 60 | ||
| wasm-release | OK | 81 |
Exports:addBufferIDaddPropAssignedassignBoundscalculateRecruitmentcombineMoveMortcountPtsInPolygonsestBetaParamsestLogNormalParamsgetAnnualSurvivalgetMeangetSurvTableresampleDailyrunLambdaMCMCsetupMonthlySurvival
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Assign buffer group IDs to point locations | addBufferID |
| Add proportion of time assigned to study area | addPropAssigned |
| Assign boundary labels to individuals by lifetime and annual mean location | assignBounds |
| Calculate recruitment from composition survey data | calculateRecruitment |
| Merge movement and survival data | combineMoveMort |
| Count points in polygons per individual | countPtsInPolygons |
| Estimate beta distribution parameters from mean and variance | estBetaParams |
| Estimate lognormal distribution parameters from mean and variance | estLogNormalParams |
| Calculate annual survival from monthly Kaplan-Meier estimates | getAnnualSurvival |
| Get mean location and attributes per individual | getMean |
| Fit Kaplan-Meier survival model and return monthly estimates | getSurvTable |
| Resample to one random location per individual per day | resampleDaily |
| Estimate lambda and uncertainty via Monte Carlo simulation | runLambdaMCMC |
| Expand individual survival records to monthly intervals | setupMonthlySurvival |